species:   Clros
pid:       PID1841
parent:    cro-mir-9
paralog:   
locus:     CADEHS020000108.2:42054-42142
matures:   ['UCGGACGUAUAUUGACUACUC', 'GAAGUUGAUAUCGAGU']
srr:       ERR5960091
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram CADEHS020000108.2:42054-42142

0 out of bounds
6 alignments
6 proper strand
6 stranded perfect matches

****************                                                  ********************** 
GAAGUUGAUAUCGAGUCUGCAGUACCAAUCUCUGAAAUUUCUAUGGCAGCAAAUCACGUACUGCAACCUCGGACGUAUAUUGACUACUC
..(((((((((((((..((((((((......(((..((....))..)))........))))))))..)))).....)))))))))....
--------------------------------------------------------------------UCGGACGUAUAUUGACUACUC l=21 a=1 c
GAAGUUGAUAUCGAGU------------------------------------------------------------------------- l=16 a=0 c*
--------------------------------------------------------------------UCGGACGUAUAUUGACUACU- l=20 a=5 ma
-AAGUUGAUAUCGAGU------------------------------------------------------------------------- l=15 a=0 ma*

--------------------------------------------------------------------UCGGACGUAUAUUGACUACU- l=20 a=5 (ma)
--------------------------------------------------------------------UCGGACGUAUAUUGACUACUC l=21 a=1 (c)

mb-01011
ax-1011111
ku-01
ss-111111101010
fn-111
